STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speG_1Acetyltransferase domain protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (181 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
 0.932
speF
Beta-eliminating lyase family protein; [E] COG1982 Arginine/lysine/ornithine decarboxylases.
     
 0.917
speC
Beta-eliminating lyase family protein; [E] COG1982 Arginine/lysine/ornithine decarboxylases.
     
 0.917
ynfB_1
Hypothetical protein; Belongs to the UPF0482 family.
  
  
 0.912
aguB
agmatine_aguB: N-carbamoylputrescine amidase; [R] COG0388 Predicted amidohydrolase.
     
  0.900
ydaF_1
Acetyltransferase family protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
 
   
 0.709
rnc
RNaseIII: ribonuclease III; [K] COG0571 dsRNA-specific ribonuclease.
   
    0.522
speG_2
Acetyltransferase domain protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
   
 0.508
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
    0.498
fimD_4
papC N-terminal domain protein; [NU] COG3188 P pilus assembly protein, porin PapC.
  
 
   0.453
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.