STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcD_22A0302: transporter, basic amino acid/polyamine antiporter family protein; [E] COG0531 Amino acid transporters. (500 aa)    
Predicted Functional Partners:
arcA
arcA: arginine deiminase; [E] COG2235 Arginine deiminase.
 
  
 0.817
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.636
malS
Alpha amylase, catalytic domain protein; [G] COG0366 Glycosidases.
   
  0.576
treC
trehalose_treC: alpha,alpha-phosphotrehalase; [G] COG0366 Glycosidases.
   
  0.576
malZ
Alpha amylase, catalytic domain protein; [G] COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
   
  0.576
amyA
Alpha amylase, catalytic domain protein; [G] COG0366 Glycosidases.
   
  0.576
CH54_141
Hypothetical protein.
       0.453
CH54_139
Acetyltransferase domain protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.415
CH54_142
Putative membrane protein.
       0.411
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.