STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1408Hypothetical protein. (327 aa)    
Predicted Functional Partners:
CH54_1409
Hypothetical protein.
 
     0.952
CH54_1411
Bacteriophage head to tail connecting family protein.
 
     0.952
CH54_1403
Hypothetical protein.
 
     0.894
CH54_1402
Hypothetical protein.
 
     0.892
CH54_1404
Hypothetical protein.
 
     0.891
CH54_1407
Hypothetical protein.
   
   0.879
CH54_1410
Hypothetical protein.
       0.800
CH54_1415
Helicase family protein.
 
     0.790
CH54_1394
Hypothetical protein.
 
     0.763
CH54_1412
Hypothetical protein.
       0.757
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.