STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1428Helix-turn-helix family protein; [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases). (202 aa)    
Predicted Functional Partners:
CH54_1429
Putative membrane protein.
       0.773
CH54_2450
hipA-like C-terminal domain protein; [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.563
CH54_1427
Hypothetical protein.
       0.526
CH54_1430
Hypothetical protein.
       0.404
CH54_1431
Hypothetical protein.
       0.404
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.