STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1519Phage integrase family protein; [L] COG0582 Integrase. (413 aa)    
Predicted Functional Partners:
CH54_1926
Conserved hypothetical protein; [L] COG0582 Integrase.
  
     0.774
CH54_3306
Conserved hypothetical protein; [L] COG0582 Integrase.
  
     0.773
CH54_3843
Conserved hypothetical protein; [L] COG0582 Integrase.
  
     0.743
CH54_3440
Prophage CP4-57 regulatory family protein; [K] COG3311 Predicted transcriptional regulator.
 
     0.468
CH54_2332
Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases.
   
    0.445
CH54_1520
FR47-like family protein.
       0.413
tyrA
CM_T: chorismate mutase; [E] COG0287 Prephenate dehydrogenase.
  
    0.409
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.