STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1525AAA domain protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family. (769 aa)    
Predicted Functional Partners:
CH54_1524
Hypothetical protein; uvrD/REP helicase N-terminal domain protein; [L] COG0210 Superfamily I DNA and RNA helicases.
 
   
 0.948
CH54_1921
Hypothetical protein; Type I restriction enzyme R N terminus family protein; [V] COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
  
    0.782
CH54_1528
Hypothetical protein.
  
     0.767
CH54_1924
Hypothetical protein.
  
    0.764
CH54_1529
Hypothetical protein.
  
     0.704
CH54_519
Bacterial Ig-like domain family protein.
  
     0.676
CH54_1925
N-6 DNA Methylase family protein; [V] COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.658
CH54_1527
Prophage CP4-57 regulatory family protein; [K] COG3311 Predicted transcriptional regulator.
  
     0.641
hdeD
Hypothetical protein.
  
     0.580
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.