STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elaB_3Hypothetical protein. (102 aa)    
Predicted Functional Partners:
yqjE
Conserved hypothetical protein; [S] COG5393 Predicted membrane protein.
 
    0.921
CH54_3069
yqjK-like family protein.
 
    0.800
CH54_731
Hypothetical protein.
  
     0.573
dps
Ferritin-like domain protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
 
    0.532
flhC
Flagellar transcriptional activator family protein; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family.
  
     0.505
CH54_1573
Acid shock repeat family protein.
       0.477
pcpY2
Glycine zipper 2TM domain protein; [M] COG3133 Outer membrane lipoprotein.
  
    0.463
pcpY
Glycine zipper 2TM domain protein; [M] COG3133 Outer membrane lipoprotein.
  
    0.459
osmY_1
BON domain protein; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.434
osmY_2
BON domain protein; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
  
    0.434
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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