STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1610Conserved hypothetical protein; [M] COG3137 Putative salt-induced outer membrane protein. (255 aa)    
Predicted Functional Partners:
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.618
CH54_1570
Hypothetical protein.
  
     0.601
mzrA
Hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.601
ynfB_1
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.591
yeeA
Fusaric acid resistance family protein; [S] COG1289 Predicted membrane protein.
  
     0.583
CH54_2470
Hypothetical protein.
  
   
 0.554
ampE
[V] COG3725 Membrane protein required for beta-lactamase induction.
  
     0.548
yfaZ
yfaZ family protein.
  
     0.537
yqjE
Conserved hypothetical protein; [S] COG5393 Predicted membrane protein.
  
     0.531
bssS
bssS family protein.
  
     0.505
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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