STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1642acetamidase/Formamidase family protein; [C] COG2421 Predicted acetamidase/formamidase. (328 aa)    
Predicted Functional Partners:
yccX
Acylphosphatase family protein; [C] COG1254 Acylphosphatases.
     
  0.900
CH54_413
acyl-CoA reductase family protein; [H] COG1541 Coenzyme F390 synthetase.
     
  0.900
CH54_414
AMP-binding enzyme family protein; [H] COG1541 Coenzyme F390 synthetase.
     
  0.900
CH54_1639
[E] COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
     0.881
CH54_1641
ABC transporter family protein; [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
   
 0.844
CH54_1637
urea_ABC_arch: urea ABC transporter, substrate-binding protein; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.840
CH54_1638
[E] COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
     0.830
CH54_1640
ABC transporter family protein; [R] COG4674 Uncharacterized ABC-type transport system, ATPase component.
 
     0.796
CH54_1644
ANTAR domain protein; [T] COG3707 Response regulator with putative antiterminator output domain.
 
     0.719
CH54_1643
Periplasmic binding domain protein; [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.685
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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