hrpB protein (Yersinia kristensenii) - STRING interaction network

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hrpB

DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. (841 aa)

Predicted Functional Partners:

rpsA

0.897

rpsD

0.873

rnd

0.851

rpsK

0.846

rpsE

0.729

rhlB

0.697

rpsQ

0.692

srmB1

0.679

deaD

0.679

rbaB

0.676

Your Current Organism:

Yersinia kristensenii

NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
deaD	hrpB	CH54_1972	CH54_1725	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	0.679
deaD	rnd	CH54_1972	CH54_603	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.	0.493
deaD	rpsA	CH54_1972	CH54_4095	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.587
deaD	rpsD	CH54_1972	CH54_2229	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.593
deaD	rpsE	CH54_1972	CH54_2236	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.524
deaD	rpsK	CH54_1972	CH54_2230	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.501
hrpB	deaD	CH54_1725	CH54_1972	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.679
hrpB	rbaB	CH54_1725	CH54_1509	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.	0.676
hrpB	rhlB	CH54_1725	CH54_2747	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.	0.697
hrpB	rnd	CH54_1725	CH54_603	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.	0.851
hrpB	rpsA	CH54_1725	CH54_4095	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.897
hrpB	rpsD	CH54_1725	CH54_2229	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.873
hrpB	rpsE	CH54_1725	CH54_2236	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.729
hrpB	rpsK	CH54_1725	CH54_2230	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.846
hrpB	rpsQ	CH54_1725	CH54_2244	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.692
hrpB	srmB1	CH54_1725	CH54_1089	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	Hypothetical protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.	0.679
rbaB	hrpB	CH54_1509	CH54_1725	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.	DEAH_box_HrpB: ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases.	0.676
rbaB	rnd	CH54_1509	CH54_603	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.	Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.	0.493
rbaB	rpsA	CH54_1509	CH54_4095	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.	Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.587
rbaB	rpsD	CH54_1509	CH54_2229	DEAD/DEAH box helicase family protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.593