STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secMSecretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family. (177 aa)    
Predicted Functional Partners:
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.835
CH54_2487
Conserved hypothetical protein; [R] COG5645 Predicted periplasmic lipoprotein.
  
     0.774
CH54_3365
Hypothetical protein.
  
     0.773
CH54_169
Conserved hypothetical protein; [S] COG3140 Uncharacterized protein conserved in bacteria; Belongs to the UPF0181 family.
  
     0.771
yfeY
Hypothetical protein.
  
     0.769
CH54_1742
Bacterial chaperone lipo family protein.
  
     0.768
igaA
Intracellular growth attenuator IgaA family protein.
  
     0.768
ynfB_1
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.768
yfeE
yniB-like family protein.
  
     0.766
CH54_3488
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.756
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.