STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhsA_1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
CH54_1864
Bacterial virulence factor hemolysin family protein; [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.770
bhsA_2
Hypothetical protein.
  
     0.768
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.759
CH54_320
Membrane-bound lysozyme-inhibitor of c-type lysozyme family protein; [R] COG3895 Predicted periplasmic protein.
  
     0.751
aaeX
Hypothetical protein.
  
     0.734
CH54_2575
asmA family protein.
  
     0.730
CH54_1488
Haloacid dehalogenase-like hydrolase family protein; [E] COG0560 Phosphoserine phosphatase.
  
     0.724
yciC
Hypothetical protein.
  
     0.721
helD
Hypothetical protein; uvrD/REP helicase N-terminal domain protein; [L] COG0210 Superfamily I DNA and RNA helicases.
  
     0.716
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.713
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.