STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_2141Hypothetical protein. (252 aa)    
Predicted Functional Partners:
traD
conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class.
 
     0.931
CH54_2144
Integrating conjugative element, PFL_4695 family domain protein; ICE_PFL_4695: integrating conjugative element, PFL_4695 family domain protein.
 
     0.884
CH54_2145
Hypothetical protein.
 
     0.884
CH54_2146
Putative lipoprotein.
 
     0.884
CH54_2107
Hypothetical protein; traG-like, N-terminal region family protein.
 
     0.805
CH54_2109
Integrating conjugative element protein, PFL_4711 family; conj_TIGR03755: integrating conjugative element protein, PFL_4711 family.
 
     0.805
CH54_2110
traU family protein.
 
     0.805
CH54_2128
Conjugative transfer ATPase, PFL_4706 family; traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family.
 
     0.805
CH54_2129
Hypothetical protein.
 
     0.805
CH54_2130
Bacterial conjugation TrbI-like family protein.
 
     0.805
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.