STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oglOligogalacturonate lyase family protein; [U] COG0823 Periplasmic component of the Tol biopolymer transport system. (388 aa)    
Predicted Functional Partners:
CH54_231
Periplasmic pectate lyase family protein.
     
 0.940
pelY
Periplasmic pectate lyase family protein.
     
 0.937
CH54_233
kduI/IolB family protein; [G] COG3717 5-keto 4-deoxyuronate isomerase.
     
 0.917
ompA1
ompA-like transmembrane domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.786
ygbF
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.737
CH54_3262
ompA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.719
kdgR
iclR helix-turn-helix domain protein; [K] COG1414 Transcriptional regulator.
 
   
 0.717
CH54_3320
ompA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.629
CH54_3288
Hypothetical protein.
  
     0.626
CH54_1656
[P] COG1858 Cytochrome c peroxidase.
  
   0.615
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.