STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgRiclR helix-turn-helix domain protein; [K] COG1414 Transcriptional regulator. (263 aa)    
Predicted Functional Partners:
kipI
[E] COG2049 Allophanate hydrolase subunit 1.
  
    0.838
CH54_1157
Conserved hypothetical protein; [E] COG1984 Allophanate hydrolase subunit 2.
  
    0.833
ogl
Oligogalacturonate lyase family protein; [U] COG0823 Periplasmic component of the Tol biopolymer transport system.
 
   
 0.717
lutR_1
Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators.
  
  
 0.591
lutR_2
Bacterial regulatory s, gntR family protein; [K] COG2186 Transcriptional regulators.
  
  
 0.549
kdgK
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
 
   
 0.523
ybgL
lamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.489
b4390
nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism.
   
  
 0.482
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.436
b0867
N-acetylmuramoyl-L-alanine amidase family protein; [V] COG3023 Negative regulator of beta-lactamase expression.
       0.413
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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