STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galS_1Helix-turn-helix family protein; [K] COG1609 Transcriptional regulators. (326 aa)    
Predicted Functional Partners:
gltB
Glutamine amidotransferases class-II family protein; [E] COG0070 Glutamate synthase domain 3.
    
 
 0.725
dhaM
Dha_pts: dihydroxyacetone kinase, phosphotransfer subunit; [S] COG3412 Uncharacterized protein conserved in bacteria; Belongs to the PEP-utilizing enzyme family.
   
 
 0.706
chbF
Hypothetical protein; Family 4 glycosyl hydrolase C-terminal domain protein; [G] COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
       0.548
fpr_1
PTS_HPr_: phosphocarrier, HPr family protein; [G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain.
   
 
 0.467
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.450
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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