STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_2311Hypothetical protein. (296 aa)    
Predicted Functional Partners:
CH54_2310
[NU] COG3166 Tfp pilus assembly protein PilN.
  
 
 0.996
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein; [U] COG4796 Type II secretory pathway, component HofQ.
 
 
 0.958
CH54_2309
Hypothetical protein.
       0.795
CH54_1454
beta/Gamma crystallin family protein.
  
 
   0.791
pilF
type_IV_pilW: type IV pilus biogenesis/stability protein PilW; [NU] COG3063 Tfp pilus assembly protein PilF.
  
   
 0.751
hofC
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
   
 
 0.680
CH54_3458
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
   
 
 0.680
secM
Secretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.671
CH54_2308
Hypothetical protein.
       0.658
CH54_1080
Suppressor of fused family protein.
  
     0.657
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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