STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
igaAIntracellular growth attenuator IgaA family protein. (752 aa)    
Predicted Functional Partners:
CH54_2975
Conserved hypothetical protein; [S] COG3164 Predicted membrane protein.
  
     0.769
secM
Secretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.768
CH54_2487
Conserved hypothetical protein; [R] COG5645 Predicted periplasmic lipoprotein.
  
     0.765
bssS
bssS family protein.
  
     0.762
CH54_1742
Bacterial chaperone lipo family protein.
  
     0.760
CH54_3365
Hypothetical protein.
  
     0.754
CH54_731
Hypothetical protein.
  
     0.753
ynfB_1
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.751
yfeY
Hypothetical protein.
  
     0.748
yfeE
yniB-like family protein.
  
     0.736
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.