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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_241Periplasmic solute binding family protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family. (322 aa)    
Predicted Functional Partners:
mntB_1
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 0.999
ecfA1
ABC transporter family protein; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.999
mntB_2
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 0.998
fhuC_1
ABC transporter family protein; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
  
 0.949
mntB_4
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 0.938
zinT
yodA lipocalin-like domain protein; [R] COG3443 Predicted periplasmic or secreted protein.
 
    0.869
znuB
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 0.867
znuC
ABC transporter family protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.809
yjiA
cobW/HypB/UreG, nucleotide-binding domain protein; [R] COG0523 Putative GTPases (G3E family).
  
  
 0.749
rpsN
Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.662
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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