STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_2479Hypothetical protein; [K] COG2345 Predicted transcriptional regulator. (214 aa)    
Predicted Functional Partners:
ahpC
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein; [O] COG0450 Peroxiredoxin.
 
    0.856
b4390
nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism.
   
    0.819
fur
Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
    0.765
zur
Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
    0.765
CH54_2480
[GEPR] COG0477 Permeases of the major facilitator superfamily.
 
     0.655
CH54_1288
Conserved hypothetical protein; [S] COG3575 Uncharacterized protein conserved in bacteria.
  
     0.513
CH54_1260
4Fe-4S binding domain protein; [C] COG1145 Ferredoxin.
   
   0.508
napF
Ferredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
   
   0.508
hyfH
4Fe-4S dicluster domain protein; [C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
    
   0.457
fdx_1
4Fe-4S dicluster domain protein; [C] COG1145 Ferredoxin.
    
   0.457
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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