STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadAATPase-IB2_Cd: cadmium-translocating P-type ATPase; [P] COG2217 Cation transport ATPase. (775 aa)    
Predicted Functional Partners:
copA
ATPase-IB1_Cu: copper-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
 
0.932
zitB
CDF: cation diffusion facilitator transporter family protein; [P] COG1230 Co/Zn/Cd efflux system component.
  
  
 0.582
zntR
zntR: Zn(II)-responsive transcriptional regulator; [K] COG0789 Predicted transcriptional regulators.
  
  
 0.463
fieF
Cation diffusion facilitator transporter family protein; Cation-efflux transporter that may have a role in detoxification.
 
 
 0.455
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.433
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.432
sodC
Copper/zinc superoxide dismutase family protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 
 0.421
CH54_2709
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein; [O] COG0678 Peroxiredoxin.
   
 
 0.419
CH54_2803
yhhN-like family protein; [S] COG3714 Predicted membrane protein.
       0.417
bigR_2
Bacterial regulatory, arsR family protein; [K] COG0640 Predicted transcriptional regulators.
  
  
 0.416
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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