STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas3fCas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST; [R] COG1203 Predicted helicases. (1090 aa)    
Predicted Functional Partners:
cas1
Cas1: CRISPR-associated endonuclease Cas1; [L] COG1518 Uncharacterized protein predicted to be involved in DNA repair.
 
  
 0.973
csy1
cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1.
 
   
 0.924
csy2
cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2.
 
   
 0.924
csy3
cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3.
 
   
 0.923
cas6f
cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST.
 
   
 0.923
CH54_30
Hypothetical protein.
       0.432
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.