Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ridAReactive intermediate/imine deaminase family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (128 aa)    
Predicted Functional Partners:
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
  
    0.752
tdcB
Pyridoxal-phosphate dependent enzyme family protein; [E] COG1171 Threonine dehydratase.
 
 0.739
pyrB
Asp_carb_tr: aspartate carbamoyltransferase; [F] COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.737
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
 
    0.710
ilvA
ilvA_2Cterm: threonine ammonia-lyase, biosynthetic; [E] COG1171 Threonine dehydratase.
 
 0.681
hpr
PTS_HPr_: phosphocarrier, HPr family protein; [G] COG1925 Phosphotransferase system, HPr-related proteins.
   
    0.535
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
   
    0.533
pflB
Pyr_form_ly_1: formate acetyltransferase; [C] COG1882 Pyruvate-formate lyase.
   
 
  0.523
ilvN
Acolac_sm: acetolactate synthase, small subunit; [E] COG0440 Acetolactate synthase, small (regulatory) subunit.
    
  0.514
CH54_391
ACT domain protein; [E] COG0440 Acetolactate synthase, small (regulatory) subunit.
    
  0.514
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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