STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3042Conserved hypothetical protein; [L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. (117 aa)    
Predicted Functional Partners:
CH54_2332
Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases.
 
    0.703
diaA
SIS domain protein; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily.
  
  
 0.590
dprA
dprA: DNA protecting protein DprA; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
    0.572
comM
Sigma-54 interaction domain protein; [O] COG0606 Predicted ATPase with chaperone activity.
 
  
 0.557
gmr_1
GGDEF: diguanylate cyclase domain protein; [T] COG2202 FOG: PAS/PAC domain.
  
    0.546
osmY_3
BON domain protein; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
     
 0.539
CH54_4098
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2; [R] COG0658 Predicted membrane metal-binding protein.
  
    0.534
CH54_2404
HAMP domain protein; [T] COG2200 FOG: EAL domain.
   
    0.457
yhdA
[T] COG2200 FOG: EAL domain.
   
    0.457
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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