STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadHNADH:flavin oxidoreductase / NADH oxidase family protein; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (673 aa)    
Predicted Functional Partners:
gltB
Glutamine amidotransferases class-II family protein; [E] COG0070 Glutamate synthase domain 3.
  
 
 0.999
fadB
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.839
fre
Oxidoreductase NAD-binding domain protein; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
 0.828
hcr
2Fe-2S iron-sulfur cluster binding domain protein; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.808
fadJ
Fatty oxidation complex, alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.759
ycbX_2
MOSC domain protein; [R] COG3217 Uncharacterized Fe-S protein.
   
 0.699
fdx
Fdx_isc: ferredoxin, 2Fe-2S type, ISC system; [C] COG0633 Ferredoxin.
   
 0.680
CH54_2288
Abi-like family protein.
   
 0.680
ycbX_1
2Fe-2S iron-sulfur cluster binding domain protein; [C] COG0633 Ferredoxin.
   
 0.680
plsB
plsB: glycerol-3-phosphate O-acyltransferase; [I] COG2937 Glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
  
  
 0.671
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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