STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdeDHypothetical protein. (188 aa)    
Predicted Functional Partners:
gadC
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
 
  
 0.912
hdeB_2
hdeA/HdeB family protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
  
  
 0.858
CH54_135
hdeA/HdeB family protein.
  
  
 0.856
sapB_1
mgtC family protein; [S] COG1285 Uncharacterized membrane protein.
  
  
 0.850
gadA
glu-decarb-GAD: glutamate decarboxylase; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins; Belongs to the group II decarboxylase family.
 
  
 0.716
CH54_519
Bacterial Ig-like domain family protein.
  
     0.685
mgtC
mgtC family protein; [S] COG1285 Uncharacterized membrane protein.
  
  
 0.630
CH54_660
Hypothetical protein.
  
    0.594
CH54_1525
AAA domain protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.
  
     0.580
CH54_1524
Hypothetical protein; uvrD/REP helicase N-terminal domain protein; [L] COG0210 Superfamily I DNA and RNA helicases.
  
     0.534
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.