STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3153Putative pilin protein, major subunit. (70 aa)    
Predicted Functional Partners:
CH54_3152
Type IV leader peptidase family protein; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
       0.693
CH54_3144
[U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats.
     
 0.607
CH54_3150
Bacterial type II and III secretion system family protein; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
     
 0.592
CH54_3142
Hypothetical protein.
       0.584
CH54_3143
tadE-like family protein.
       0.584
CH54_3145
Type II secretion system (T2SS), F family protein; [NU] COG2064 Flp pilus assembly protein TadC.
       0.584
CH54_3146
Type II secretion system (T2SS), F family protein; [U] COG4965 Flp pilus assembly protein TadB.
       0.584
tadA_1
Type II/IV secretion system family protein; [U] COG4962 Flp pilus assembly protein, ATPase CpaF.
       0.584
CH54_3148
[U] COG4963 Flp pilus assembly protein, ATPase CpaE.
       0.584
CH54_3149
Hypothetical protein.
       0.584
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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