Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
CH54_3208Hypothetical protein; Transcriptional regulatory, C terminal family protein; [K] COG3710 DNA-binding winged-HTH domains. (351 aa)    
Predicted Functional Partners:
CH54_3207
Hypothetical protein.
       0.773
CH54_2781
Bacterial regulatory s, tetR family protein; [K] COG1309 Transcriptional regulator.
  
     0.624
nreC_2
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.522
CH54_2631
Hypothetical protein.
  
     0.494
CH54_1772
Conserved hypothetical protein; [S] COG4701 Uncharacterized protein conserved in bacteria.
  
     0.483
CH54_504
Phage integrase family protein; [L] COG0582 Integrase.
  
     0.461
CH54_2380
Hypothetical protein; Transcriptional regulatory, C terminal family protein; [K] COG3710 DNA-binding winged-HTH domains.
  
     0.453
priC
Primosomal replication priB and priC family protein; [L] COG3923 Primosomal replication protein N''.
  
    0.403
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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