STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybA4Fe-4S dicluster domain protein; [C] COG0437 Fe-S-cluster-containing hydrogenase components 1. (342 aa)    
Predicted Functional Partners:
hybB
Putative membrane protein; [C] COG5557 Polysulphide reductase.
 
 0.998
hyb0
hydA: hydrogenase family protein; [C] COG1740 Ni,Fe-hydrogenase I small subunit.
 
  
 0.987
hybC_1
Nickel-dependent hydrogenase family protein; [C] COG0374 Ni,Fe-hydrogenase I large subunit.
 
  
 0.965
hybE
hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family domain protein.
 
    0.938
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit; [C] COG2864 Cytochrome b subunit of formate dehydrogenase.
 
 
 0.931
dmsA1
dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.907
dmsA2
dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.903
hybD
hupD: hydrogenase expression/formation protein; [C] COG0680 Ni,Fe-hydrogenase maturation factor.
 
  
 0.895
CH54_2460
Molybdopterin oxidoreductase Fe4S4 domain protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
 
 0.881
fdnG
formate-DH-alph: formate dehydrogenase-N alpha subunit; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
 
 
 0.878
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.