Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CH54_342Phage shock PspD family protein. (79 aa)    
Predicted Functional Partners:
pspB
phageshock_pspB: phage shock protein B.
  
  
 0.986
pspC
phageshock_pspC: phage shock protein C; [KT] COG1983 Putative stress-responsive transcriptional regulator.
  
  
 0.986
pspA
phageshock_pspA: phage shock protein A; [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.941
ycjX
Conserved hypothetical protein; [R] COG3106 Predicted ATPase.
     
 0.882
ycjF
Conserved hypothetical protein; [S] COG3768 Predicted membrane protein.
     
 0.882
pspF
phageshock_pspF: psp operon transcriptional activator; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
     
 0.503
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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