STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3433Plasmid stabilization system family protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system. (86 aa)    
Predicted Functional Partners:
CH54_3434
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
 
   
 0.916
CH54_186
relB_DinJ: addiction module antitoxin, RelB/DinJ family protein; [L] COG3077 DNA-damage-inducible protein J.
  
 
 0.789
CH54_1320
Antitoxin Phd-YefM, type II toxin-antitoxin system family protein; [D] COG2161 Antitoxin of toxin-antitoxin stability system.
   
 
 0.708
CH54_4032
Helix-turn-helix family protein; [K] COG2944 Predicted transcriptional regulator.
   
 
 0.698
CH54_3792
phage_O_Nterm: phage replication protein O, N-terminal domain.
  
     0.637
CH54_3971
type_I_sec_TolC: type I secretion outer membrane, TolC family protein; [MU] COG1538 Outer membrane protein.
  
     0.614
CH54_3288
Hypothetical protein.
  
     0.497
CH54_3775
yqaJ-like viral recombinase domain protein.
  
     0.495
CH54_3776
Rect: recombinase, phage RecT family protein; [L] COG3723 Recombinational DNA repair protein (RecE pathway).
  
     0.480
CH54_3827
Tape_meas_nterm: tape measure domain protein; [S] COG5281 Phage-related minor tail protein.
  
     0.472
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.