STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3455Type IV pilus biogenesis family protein. (165 aa)    
Predicted Functional Partners:
gspD
type_II_gspD: type II secretion system protein D; [NU] COG1450 Type II secretory pathway, component PulD.
  
 
 0.951
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family; [NU] COG1450 Type II secretory pathway, component PulD.
  
 
 0.865
CH54_3458
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
  
  
 0.773
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.752
gspG
typeII_sec_gspG: type II secretion system protein G; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
  
  
 0.720
CH54_3463
Type II secretion system (T2SS), L family protein; [U] COG3297 Type II secretory pathway, component PulL.
     
 0.704
CH54_3462
Type II secretion system (T2SS), K family protein; [U] COG3156 Type II secretory pathway, component PulK.
  
  
 0.691
gspJ
gspJ: type II secretion system protein J; [U] COG4795 Type II secretory pathway, component PulJ.
  
  
 0.678
gspI
gspI: type II secretion system protein I; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
  
  
 0.659
CH54_3466
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
  
  
 0.630
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.