STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3599[M] COG3765 Chain length determinant protein. (379 aa)    
Predicted Functional Partners:
wecC
Nucleotide sugar dehydrogenase family protein; Catalyzes the four-electron oxidation of UDP-N-acetyl-D- mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N- acetylmannosaminuronic acid (UDP-ManNAcA); Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. WecC subfamily.
  
  
 0.805
CH54_3602
rmlD substrate binding domain protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
  
  
 0.755
qseG
yfhG lipofamily protein.
  
     0.745
CH54_3601
wecB: UDP-N-acetylglucosamine 2-epimerase; [M] COG0381 UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.723
secM
Secretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.683
CH54_3995
yejG-like family protein.
  
     0.674
CH54_3607
Polysaccharide biosynthesis family protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.637
CH54_3560
Conserved hypothetical protein; [R] COG5544 Predicted periplasmic lipoprotein.
  
     0.634
yhaH
Conserved hypothetical protein; [S] COG3152 Predicted membrane protein.
  
     0.621
CH54_1772
Conserved hypothetical protein; [S] COG4701 Uncharacterized protein conserved in bacteria.
  
     0.616
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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