STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_362ynbE-like lipofamily protein. (64 aa)    
Predicted Functional Partners:
CH54_363
Conserved hypothetical protein; [S] COG3784 Uncharacterized protein conserved in bacteria.
 
  
 0.962
CH54_361
Dicarboxylate transport family protein.
 
   
 0.879
CH54_2572
Winged helix-turn-helix DNA-binding family protein; [K] COG3423 Predicted transcriptional regulator.
  
     0.531
sfiA
Cell division inhibitor SulA family protein; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division.
  
     0.526
CH54_1999
Winged helix-turn-helix DNA-binding family protein; [K] COG3423 Predicted transcriptional regulator.
  
     0.514
CH54_746
Winged helix-turn-helix DNA-binding family protein; [K] COG3423 Predicted transcriptional regulator.
  
     0.485
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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