STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3681Nucleoside-specific channel-forming, Tsx family protein. (259 aa)    
Predicted Functional Partners:
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV; [C] COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4.
       0.460
cyoA
cyoA: ubiquinol oxidase, subunit II; [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
       0.460
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.445
cyoC
cyoC: cytochrome o ubiquinol oxidase, subunit III; [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
       0.423
ampG
2A0125: AmpG-like permease family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.417
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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