STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampG2A0125: AmpG-like permease family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily. (492 aa)    
Predicted Functional Partners:
CH54_886
Thiaz-red: thiazolinyl imide reductase family protein; [Q] COG4693 Oxidoreductase (NAD-binding), involved in siderophore biosynthesis.
  
    0.837
CH54_3171
Isochor_syn: isochorismate synthase family protein; [HQ] COG1169 Isochorismate synthase.
  
    0.815
menF
Isochorismate synthase family protein; Catalyzes the conversion of chorismate to isochorismate.
  
    0.815
CH54_883
AMP-binding enzyme family protein; [Q] COG1021 Peptide arylation enzymes.
 
    0.757
CH54_3172
DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase; [Q] COG1021 Peptide arylation enzymes.
 
    0.751
CH54_3683
Conserved hypothetical protein; [M] COG3056 Uncharacterized lipoprotein.
       0.618
CH54_885
Thioesterase domain protein; [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
 
  
 0.558
bglX1
Hypothetical protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.534
dacB
PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; [M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
   
 0.521
anmK
Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
   
 0.464
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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