STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbTHAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase. (218 aa)    
Predicted Functional Partners:
yniC
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
  
0.926
mtlA
mtlA: PTS system, mannitol-specific IIC component family protein; [G] COG2213 Phosphotransferase system, mannitol-specific IIBC component.
  
 
  0.910
mtlD2
Mannitol dehydrogenase Rossmann domain protein; [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases.
    
  0.901
yfbU
yfbU domain protein; [S] COG3013 Uncharacterized conserved protein; Belongs to the UPF0304 family.
 
    0.708
CH54_2513
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
     0.684
yqaB
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
     0.679
CH54_913
2A0110: nucleoside transporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
 
    0.618
hcaT
lacY proton/sugar symporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
  
    0.563
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
     
 0.451
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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