STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_397Hypothetical protein. (443 aa)    
Predicted Functional Partners:
CH54_396
Virulence factor SrfB family protein; [S] COG4457 Uncharacterized protein conserved in bacteria, putative virulence factor.
  
 0.993
CH54_395
Bacterial virulence factor family protein; [S] COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor.
 
  
 0.966
mtlR
Mannitol repressor family protein; [K] COG3722 Transcriptional regulator.
  
     0.703
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.693
CH54_1080
Suppressor of fused family protein.
  
     0.661
yiaH
Acyltransferase family protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.621
CH54_3630
Hypothetical protein.
  
     0.577
flgN
flgN family protein; [NUO] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone.
  
     0.566
CH54_1456
Alpha-2-macroglobulin family protein; Protects the bacterial cell from host peptidases.
 
  
 0.546
ydgA
Conserved hypothetical protein; [S] COG5339 Uncharacterized protein conserved in bacteria.
  
     0.512
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.