STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_3970Bacterial Ig-like domain family protein. (4240 aa)    
Predicted Functional Partners:
CH54_3971
type_I_sec_TolC: type I secretion outer membrane, TolC family protein; [MU] COG1538 Outer membrane protein.
 
  
 0.947
CH54_3972
type_I_sec_LssB: type I secretion system ATPase family protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.813
qseG
yfhG lipofamily protein.
    
 
 0.730
ftsK
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
   
 
 0.730
CH54_3825
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
 
   
 0.721
hemR
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
 
 0.711
fepA
tonB-siderophor: TonB-dependent siderophore receptor family protein; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.
    
 
 0.709
CH54_276
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
 
 0.707
CH54_1170
Hemolysin-type calcium-binding repeat family protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 0.682
prc
Hypothetical protein; Prc: C-terminal processing peptidase family protein; [M] COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
  
   0.680
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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