STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp_1asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators. (151 aa)    
Predicted Functional Partners:
asnC_2
asnC-type helix-turn-helix domain protein; [K] COG1522 Transcriptional regulators.
  
     0.772
CH54_405
Zinc carboxypeptidase family protein; [R] COG3608 Predicted deacylase.
       0.573
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.474
gltB
Glutamine amidotransferases class-II family protein; [E] COG0070 Glutamate synthase domain 3.
     
 0.471
b4390
nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism.
   
  
 0.430
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.