STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_4067Conserved hypothetical protein; [S] COG2990 Uncharacterized protein conserved in bacteria. (317 aa)    
Predicted Functional Partners:
yeeA
Fusaric acid resistance family protein; [S] COG1289 Predicted membrane protein.
  
     0.684
macB_6
ABC transporter family protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
       0.563
yejM
Type I phosphodiesterase / nucleotide pyrophosphatase family protein; [R] COG3083 Predicted hydrolase of alkaline phosphatase superfamily.
  
     0.510
macA_4
RND_mfp: efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.501
appA_1
Histidine phosphatase super family protein.
  
     0.490
ampE
[V] COG3725 Membrane protein required for beta-lactamase induction.
  
     0.473
tsgA
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.472
CH54_3363
Conserved hypothetical protein; [S] COG3171 Uncharacterized protein conserved in bacteria.
  
     0.410
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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