STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_413acyl-CoA reductase family protein; [H] COG1541 Coenzyme F390 synthetase. (801 aa)    
Predicted Functional Partners:
CH54_414
AMP-binding enzyme family protein; [H] COG1541 Coenzyme F390 synthetase.
 
  
 
0.970
CH54_412
Acyl-synthetase, LuxE family protein.
 
     0.951
CH54_415
Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
    0.908
CH54_1642
acetamidase/Formamidase family protein; [C] COG2421 Predicted acetamidase/formamidase.
     
  0.900
CH54_411
Sugar (and other) transporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.623
adhE
[C] COG1012 NAD-dependent aldehyde dehydrogenases; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.597
CH54_888
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.561
CH54_3164
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.527
mmsA
MMSDH: methylmalonate-semialdehyde dehydrogenase; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
   
 
 0.482
gabD
SSADH: succinate-semialdehyde dehydrogenase family protein; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
   
 
 0.482
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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