STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbE-2dsbE: periplasmic thiol:disulfide oxidoreductases, DsbE subfamily protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins. (182 aa)    
Predicted Functional Partners:
ccmF-2
nrfE: cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor.
 
  
 0.988
ccmH_1
Cytochrome C biogenesis family protein; Possible subunit of a heme lyase.
 
  
 0.967
ccmF
nrfE: cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor.
 
  
 0.953
ccmE
ccmE family protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
  
 0.947
CH54_44
Tetratricopeptide repeat family protein; [O] COG4235 Cytochrome c biogenesis factor.
 
  
 0.918
ccmC
Heme exporter CcmC family protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
  
 0.894
ccmH_2
Cytochrome C biogenesis family protein; Possible subunit of a heme lyase.
 
  
 0.862
ccmI
cytochro_ccmI: cytochrome c-type biogenesis protein CcmI; [O] COG4235 Cytochrome c biogenesis factor.
 
  
 0.841
ahpC
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein; [O] COG0450 Peroxiredoxin.
  
 0.832
ccmB
Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
  
 0.830
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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