Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CH54_44Tetratricopeptide repeat family protein; [O] COG4235 Cytochrome c biogenesis factor. (219 aa)    
Predicted Functional Partners:
ccmH_1
Cytochrome C biogenesis family protein; Possible subunit of a heme lyase.
  
 0.958
nrfD
cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit; [P] COG3301 Formate-dependent nitrite reductase, membrane component.
 
  
 0.941
ccmF-2
nrfE: cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor.
 
 
 0.939
dsbE-2
dsbE: periplasmic thiol:disulfide oxidoreductases, DsbE subfamily protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.934
nrfB
cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit.
 
   
 0.924
nrfA
Cytochrome c552 family protein; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
   
 0.873
nrfC
cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein; [C] COG0437 Fe-S-cluster-containing hydrogenase components 1.
 
   
 0.800
dsbE
dsbE: periplasmic thiol:disulfide oxidoreductases, DsbE subfamily protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.750
ccmF
nrfE: cytochrome c-type biogenesis protein CcmF; [O] COG1138 Cytochrome c biogenesis factor.
 
 
 0.746
CH54_1431
Hypothetical protein.
  
     0.647
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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