Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydgJHypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein; [R] COG0673 Predicted dehydrogenases and related proteins. (350 aa)    
Predicted Functional Partners:
cobB-2
Sir2 family protein; [K] COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
    
   0.761
lysS
lysS_bact: lysine--tRNA ligase; [J] COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.660
CH54_450
Conserved hypothetical protein; [R] COG0385 Predicted Na+-dependent transporter.
       0.522
araC
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.506
iolD
myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase; [E] COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.417
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.409
iolC
myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase; [G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.405
CH54_2435
Putative membrane protein; [G] COG0738 Fucose permease.
 
    0.404
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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