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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgJHypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein; [R] COG0673 Predicted dehydrogenases and related proteins. (350 aa)    
Predicted Functional Partners:
iolD
myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase; [E] COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.843
iolB
myo_inos_iolB: 5-deoxy-glucuronate isomerase; [G] COG3718 Uncharacterized enzyme involved in inositol metabolism.
  
  
 0.813
CH54_2364
Xylose isomerase-like TIM barrel family protein; [G] COG1082 Sugar phosphate isomerases/epimerases.
 
  
 0.713
iolE
Myo-inosose-2 dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol). Belongs to the IolE/MocC family.
  
  
 0.693
cobB-2
Sir2 family protein; [K] COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
    
   0.675
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.660
lysS
lysS_bact: lysine--tRNA ligase; [J] COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.648
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; [M] COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.587
arnB_2
Beta-eliminating lyase family protein; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.
 
  
 0.579
iolC
myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase; [G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.559
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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