Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ydgKHypothetical protein. (147 aa)    
Predicted Functional Partners:
CH54_2198
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
   
 
 0.825
rnfA
Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.807
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
    0.755
fhs
Formate--tetrahydrofolate ligase family protein; [F] COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.
       0.582
rnfC_1
Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
  
    0.568
CH54_46
Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.473
CH54_2438
Bacterial regulatory s, luxR family protein; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.458
bvgS
Hpt domain protein; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.458
arcB
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
   
 
 0.403
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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