node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH54_2013 | CH54_3111 | CH54_2013 | CH54_3111 | Hypothetical protein. | [T] COG3103 SH3 domain protein. | 0.431 |
CH54_2013 | rnb | CH54_2013 | CH54_477 | Hypothetical protein. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.408 |
CH54_2013 | yqjE | CH54_2013 | CH54_3070 | Hypothetical protein. | Conserved hypothetical protein; [S] COG5393 Predicted membrane protein. | 0.511 |
CH54_2892 | CH54_3111 | CH54_2892 | CH54_3111 | Conserved hypothetical protein; [S] COG3068 Uncharacterized protein conserved in bacteria. | [T] COG3103 SH3 domain protein. | 0.635 |
CH54_2892 | rnb | CH54_2892 | CH54_477 | Conserved hypothetical protein; [S] COG3068 Uncharacterized protein conserved in bacteria. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.509 |
CH54_2892 | yqjE | CH54_2892 | CH54_3070 | Conserved hypothetical protein; [S] COG3068 Uncharacterized protein conserved in bacteria. | Conserved hypothetical protein; [S] COG5393 Predicted membrane protein. | 0.477 |
CH54_3111 | CH54_2013 | CH54_3111 | CH54_2013 | [T] COG3103 SH3 domain protein. | Hypothetical protein. | 0.431 |
CH54_3111 | CH54_2892 | CH54_3111 | CH54_2892 | [T] COG3103 SH3 domain protein. | Conserved hypothetical protein; [S] COG3068 Uncharacterized protein conserved in bacteria. | 0.635 |
CH54_3111 | rnb | CH54_3111 | CH54_477 | [T] COG3103 SH3 domain protein. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.483 |
CH54_3111 | yqjE | CH54_3111 | CH54_3070 | [T] COG3103 SH3 domain protein. | Conserved hypothetical protein; [S] COG5393 Predicted membrane protein. | 0.678 |
fdhF_1 | rnb | CH54_475 | CH54_477 | Molybdopterin oxidoreductase family protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.529 |
rnb | CH54_2013 | CH54_477 | CH54_2013 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein. | 0.408 |
rnb | CH54_2892 | CH54_477 | CH54_2892 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Conserved hypothetical protein; [S] COG3068 Uncharacterized protein conserved in bacteria. | 0.509 |
rnb | CH54_3111 | CH54_477 | CH54_3111 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | [T] COG3103 SH3 domain protein. | 0.483 |
rnb | fdhF_1 | CH54_477 | CH54_475 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Molybdopterin oxidoreductase family protein; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.529 |
rnb | rnd | CH54_477 | CH54_603 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.588 |
rnb | rne | CH54_477 | CH54_70 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease, Rne/Rng family domain protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.673 |
rnb | rnpA | CH54_477 | CH54_2498 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.499 |
rnb | rph | CH54_477 | CH54_2595 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.596 |
rnb | yhhQ | CH54_477 | CH54_2800 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 0.466 |