STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacRdeoR-like helix-turn-helix domain protein; [KG] COG1349 Transcriptional regulators of sugar metabolism. (248 aa)    
Predicted Functional Partners:
pfkB
pfkB: 1-phosphofructokinase; [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
 
  
 0.823
fruA
FRU: PTS system, Fru family, IIB component domain protein; [G] COG1299 Phosphotransferase system, fructose-specific IIC component.
 
  
 0.777
yfiQ
Acetyltransferase family protein; [C] COG1042 Acyl-CoA synthetase (NDP forming).
    
   0.643
CH54_482
Hypothetical protein.
       0.625
fsa
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.586
csdB
PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family protein; [C] COG1882 Pyruvate-formate lyase.
  
 
 0.422
CH54_666
ribose/Galactose Isomerase family protein; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
 
  
 0.411
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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