Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bhsA_2Hypothetical protein. (86 aa)    
Predicted Functional Partners:
CH54_3630
Hypothetical protein.
  
     0.773
CH54_2003
Hypothetical protein.
  
     0.772
bhsA_1
Hypothetical protein.
  
     0.768
CH54_1864
Bacterial virulence factor hemolysin family protein; [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.760
bhsA_3
Hypothetical protein.
  
     0.756
holD
DNA polymerase III psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.754
mdoC
Acyltransferase family protein; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane.
  
     0.747
ompX
ompA-like transmembrane domain protein; [M] COG3637 Opacity protein and related surface antigens.
  
     0.732
CH54_1488
Haloacid dehalogenase-like hydrolase family protein; [E] COG0560 Phosphoserine phosphatase.
  
     0.730
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.723
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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