Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CH54_511Resolvase, N terminal domain protein; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs. (184 aa)    
Predicted Functional Partners:
CH54_2626
Bacteriophage replication protein; Gene A family.
   
    0.467
CH54_2611
P2 phage tail completion R family protein.
   
    0.449
CH54_2619
Phage capsid scaffolding (GPO) serine peptidase family protein.
   
    0.449
CH54_2599
Phage P2 GpU family protein; [R] COG3499 Phage protein U.
   
    0.437
CH54_2608
Lysozyme family protein; Gene 25-like; [R] COG3628 Phage baseplate assembly protein W.
   
  
 0.423
CH54_512
Hypothetical protein.
       0.422
CH54_2618
major_capsid_P2: phage major capsid protein, P2 family.
   
    0.419
CH54_2616
Phage head completion family protein.
   
    0.413
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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